PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC079473.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 184aa    MW: 19118.2 Da    PI: 7.2658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC079473.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-16124170455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  EcC079473.10 124 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 170
                   5*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.2E-19117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-19117176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-14123174No hitNo description
PfamPF000103.3E-14124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-18126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
PDEISLFLRQ VLQRSGRRAE NLPGRPGGGS GGGGGGGGGG ISFDRVVDSF SASASASGGG  60
PLAGNARLSA VGAAAAASSS VGASENEADE YDCESEGLEA LLEDVPARPN PPRGSSKRSR  120
TAEVHNLSEK RRRSRINEKM KALQSLIPNS NKTDKASMLD EAIEYLKQLQ LQVQVIALSQ  180
ILQC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030576.13e-82PREDICTED: transcription factor SPATULA-like
SwissprotQ9FUA48e-35SPT_ARATH; Transcription factor SPATULA
TrEMBLW9R1Z28e-53W9R1Z2_9R
STRINGVIT_07s0031g00450.t013e-46(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-35bHLH family protein